Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915619.1_cds_XP_016465408.1_58363
CDS Infomation

[gene=LOC107788249] [db_xref=GeneID:107788249] [protein=phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like] [protein_id=XP_016465408.1] [location=join(9799..10368,10910..11187,11801..12077,12173..12418,13250..13507)] [gbkey=CDS]
Sequence

ATGGCTCTTTCAAGTAGTAGCACTACCAACTCTCTACTTTCCAACAAATCTCAATTGGTT
CAAAACCAATCCCTTTTACCTTCTCCATTAAAGAATGCATCTTTCACCACCAACTCAACC
AAAGCCGTTAGATTTATTCAACCAATCTCAGCCGTTCATTCCGCTGACTCTTCCAAGAAC
CCCATTGTCTCCGACAAGCCCTCCTCTAAGCCTTCACCGCCGGCGGCCACTGTTACGGCG
GCGGCTACGACGGTGACGAAAACAGAATGGGCAGTGGAGAGCTGGAAATCCAAAAAGGCT
CTTCAGTTACCCGAATACCCAAATCAAGAGGAGCTTCAATCTGTTCTCAAAACGATTGAG
GAGTTCCCTCCTATCGTTTTCGCTGGTGAGGCGAGGAGTCTTGAAGAGCGTCTCGGTGAG
GCTGCTATGGGCCGGGCTTTCTTGTTACAAGGAGGTGATTGTGCTGAGAGTTTTAAGGAA
TTTAATGCGAATAATATTAGGGATACTTTTAGAATCCTTCTTCAAATGGGTGCTGTTCTC
ATGTTTGGTGGTCAGATGCCTGTTATCAAGGTTGGAAGGATGGCTGGGCAATTTGCAAAG
CCAAGATCAGATAATTTTGAGGAGAAGAATGGAGTGAAGCTGCCAAGTTACAGGGGAGAC
AACGTGAATGGAGATGCATTTGATGCCAAGTCAAGAACTCCTGACCCTCAGAGGTTGATC
AGGGCGTATTGTCAATCTGCAGCTACTTTGAATCTATTGAGAGCTTTTGCTACAGGAGGA
TATGCTGCCATGCAGAGGATCAACCAATGGAACTTGGATTTCACAGAGCACAGTGAGCAG
GGTGATAGGTATCGTGAACTAGCTAATAGAGTGGATGAGGCCCTTGGTTTCATGGCTGCT
GCTGGACTTACAGTGGATCATCCTATTATGAAAACCACAGAGTTCTGGACTTCTCATGAG
TGCTTACTTTTGCCCTATGAGCAGTCACTAACACGACTGGATTCAACTTCTGGCCTTTAC
TATGATTGTTCCGCCCATTTTCTTTGGGTTGGAGAAAGAACTAGGCAGTTGGATGGTGCG
CATGTTGAGTTCTTGAGAGGAGTTGCCAACCCCCTTGGTATTAAGGTGAGTGACAAGATG
GATCCAAGTGCATTGGTCAAGCTCATTGAGATTTTGAACCCTGATAACAAAGCTGGGAGG
ATTACAATAATTACCAGAATGGGAGCAGAGAACATGAGGGTTAAGCTTCCTCATCTTATC
AGGGCAGTCCGAAGAGCAGGGCAAATCGTCACTTGGGTATCTGATCCTATGCATGGAAAC
ACCATCAAAGCTCCTTGTGGTCTAAAAACTCGACCTTTCGATTCCATCAGGGCTGAAGTA
AGAGCATTCTTTGATGTTCATGAGCAAGAAGGAAGCCACCCGGGAGGAGTACACCTGGAG
ATGACAGGCCAAAACGTCACAGAGTGCATCGGTGGATCACGAACTGTGACCTTTGATGAT
CTGAGCTCACGTTACCACACCCACTGTGATCCTAGGCTCAATGCATCTCAGTCCCTTGAG
CTCGCTTTCATTATTGCAGAACGCCTAAGAAAGAGGAGGCTTGGATCACAAAGCGTATTA
GGTCAATAG

Peptide Sequence

PEP ID

XP_016465408.1
PEP Infomation

PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Nicotiana tabacum]
Sequence

MALSSSSTTNSLLSNKSQLVQNQSLLPSPLKNASFTTNSTKAVRFIQPISAVHSADSSKN
PIVSDKPSSKPSPPAATVTAAATTVTKTEWAVESWKSKKALQLPEYPNQEELQSVLKTIE
EFPPIVFAGEARSLEERLGEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVL
MFGGQMPVIKVGRMAGQFAKPRSDNFEEKNGVKLPSYRGDNVNGDAFDAKSRTPDPQRLI
RAYCQSAATLNLLRAFATGGYAAMQRINQWNLDFTEHSEQGDRYRELANRVDEALGFMAA
AGLTVDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGA
HVEFLRGVANPLGIKVSDKMDPSALVKLIEILNPDNKAGRITIITRMGAENMRVKLPHLI
RAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLE
MTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLGSQSVL
GQ

Transcript Sequence

Gene sequence data has not been registered.